There's a few errors in there with missing citizens, but I don't think they are related. You should be able to fix that easily by clearing traffic with TMPE.
To see if this is a mod misbehaving or some mod setting behaving unexpectedly, I recommend disabling mods that affect the AI, which would be these:
- Enhanced District Services
- Auto Line Color (not AI related and probably not the problem, but since it affects lines, we'll try removing it temporarily as well)
- TMPE
Load the city without those mods and let the simulation run for a little bit. Ignore that your city might be having some new traffic issues, we just want to see if the lines are okay or not. Making a new one to confirm if it still happens is a good idea as well.