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Players who receive these decks after the ban will get a modified version. If you already had the deck on your account, unfortunately you will have to make changes yourself.
Are we supposed to have received the new cards though? I'm not a new player so it's not a big issue, but I don't have Radha, Heart of Keld, nor my fourth copy of Edgewall Innkeeper.
As mentioned in the other response, you may craft the new cards if you choose, or use something else from your collection and keep the wildcard refunds for other purposes.