It was really as simple as making the data transmission an opt-in. It's already the case with save file and performance telemetry in the base game.
I hope a lesson was learned for Rogue Trader so a situation like this is avoided. People are typically ready to root for indie, privately held companies like Owlcat in an industry that is full of sellouts. Losing that goodwill with hamfisted missteps is a big shame.
I can confirm that all plans for usage of this software have been shut down, and it is not coming to Rogue Trader or any Pathfinder updates in any way or form.