Thanks for the update, but I have a bug to report:
I have the Augyre item in my build teamed up with a Physical to Lightning gem, and I'm still showing that I'm doing some physical damage in the calcs page.
Pastebin for ya: https://pastebin.com/P0B0KV3f
When I imported your build I noticed that you didn't have the correct skill selected in the Calcs tab; if you haven't already discovered this, then that's the cause, as selecting Ancestral Warchief correctly shows no Physical Damage.