While all rune interfaces are clunky, one change in 1.2.2 is that the order presented in shops is even worse now. There's an order to the runes, sort-of, but they're not grouped as they were. I have to make notes of which runes I've picked up and want to sell in order to make sure that I don't sell one that I want to keep. The older irritation of some round runes showing up half-way through the diamond runes is still present. Also multiple runes are not a thing in the shop, they all show up individually.
By the way, what's the state of the "Greater Aegis Rune"? It's the only one I've never seen in . . . 700 hours of playing. Ouch, that's a lot, but then it's a good game (fix the glitches and it'll be a great game).