Hey @H4mm3r_H34D47,
As long as you're logging into the same EA Account on both launchers, that progress should be kept across the Origin/EA Desktop/Steam platforms.
The main reason this may be lost would be if you've recently unlinked that Steam account from your EA Account.
If that was unlinked at all, you would just need to re-link the Steam account to recover that progress.
If you're running into any other issues after that point I would definitely reach out to an advisor directly so they can take a closer look at the account you're logging into currently.